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the bioinformatics chat

By Roman Cheplyaka

A podcast about computational biology, bioinformatics, and next generation sequencing.

  1. 1.
    #50 ENCODE3 with Jill Moore09/10/2020
    56:01
  2. 2.
    #49 Most Permissive Boolean Networks with Loïc Paulevé08/19/2020
    1:04:01
  3. 3.
    #48 Machine learning for drug development with Marinka Zitnik07/29/2020
    1:25:07
  4. 4.
    #47 Reproducible pipelines and NGLess with Luis Pedro Coelho06/24/2020
    57:34
  5. 5.
    #46 HiFi reads and HiCanu with Sergey Nurk and Sergey Koren05/27/2020
    1:09:08
  6. 6.
    #45 Genome assembly and Canu with Sergey Koren and Sergey Nurk05/20/2020
    1:16:33
  7. 7.
    #44 DNA tagging and Porcupine with Kathryn Doroschak04/29/2020
    45:00
  8. 8.
    #43 Generalized PCA for single-cell data with William Townes03/27/2020
    59:44
  1. 9.
    #42 Spectrum-preserving string sets and simplitigs with Amatur Rahman and Karel Břinda02/28/2020
    53:19
  2. 10.
    #41 Epidemic models with Kris Parag01/27/2020
    1:08:08
  3. 11.
    #40 Plasmid classification and binning with Sergio Arredondo-Alonso and Anita Schürch12/30/2019
    45:00
  4. 12.
    #39 Amplicon sequence variants and bias with Benjamin Callahan11/29/2019
    1:01:56
  5. 13.
    #38 Issues in legacy genomes with Luke Anderson-Trocmé10/22/2019
    1:01:14
  6. 14.
    #37 Causality and potential outcomes with Irineo Cabreros09/27/2019
    40:46
  7. 15.
    #36 scVI with Romain Lopez and Gabriel Misrachi08/30/2019
    1:20:07
  8. 16.
    #35 The role of the DNA shape in transcription factor binding with Hassan Samee07/26/2019
    1:01:45
  9. 17.
    #34 Power laws and T-cell receptors with Kristina Grigaityte06/29/2019
    1:26:36
  10. 18.
    #33 Genome assembly from long reads and Flye with Mikhail Kolmogorov05/31/2019
    1:12:55
  11. 19.
    #32 Deep tensor factorization and a pitfall for machine learning methods with Jacob Schreiber04/29/2019
    1:15:13
  12. 20.
    #31 Bioinformatics Contest 2019 with Alexey Sergushichev and Gennady Korotkevich03/24/2019
    1:46:22
  13. 21.
    #30 Bayesian inference of chromatin structure from Hi-C data with Simeon Carstens02/27/2019
    1:05:42
  14. 22.
    #29 Haplotype-aware genotyping from long reads with Trevor Pesout01/27/2019
    1:12:07
  15. 23.
    #28 Space-efficient variable-order Markov models with Fabio Cunial12/28/2018
    1:09:16
  16. 24.
    #27 Classification of CRISPR-induced mutations and CRISPRpic with HoJoon Lee and Seung Woo Cho11/29/2018
    56:35
  17. 25.
    #26 Feature selection, Relief and STIR with Trang Lê10/27/2018
    1:08:43
  18. 26.
    #25 Transposons and repeats with Kaushik Panda and Keith Slotkin09/24/2018
    1:40:55
  19. 27.
    #24 Read correction and Bcool with Antoine Limasset08/31/2018
    59:44
  20. 28.
    #23 RNA design, EteRNA and NEMO with Fernando Portela07/27/2018
    1:31:10
  21. 29.
    #22 smCounter2: somatic variant calling and UMIs with Chang Xu 06/29/2018
    1:04:15
  22. 30.
    #21 Linear mixed models, GWAS, and lme4qtl with Andrey Ziyatdinov05/31/2018
    50:50
  23. 31.
    #20 B cell receptor substitution profile prediction and SPURF with Kristian Davidsen and Amrit Dhar04/30/2018
    2:01:05
  24. 32.
    #19 Genome fingerprints with Gustavo Glusman04/07/2018
    1:28:53
  25. 33.
    #18 Bioinformatics Contest 2018 with Alexey Sergushichev and Ekaterina Vyahhi03/03/2018
    1:53:19
  26. 34.
    #17 Rarefaction, alpha diversity, and statistics with Amy Willis01/22/2018
    1:14:16
  27. 35.
    #16 Javier Quilez on what makes large sequencing projects successful12/24/2017
    1:03:46
  28. 36.
    #15 Optimal transport for single-cell expression data with Geoffrey Schiebinger11/26/2017
    1:08:47
  29. 37.
    #14 Generating functions for read mapping with Guillaume Filion11/13/2017
    1:10:21
  30. 38.
    #13 Bracken with Jennifer Lu10/21/2017
    46:55
  31. 39.
    #12 Modelling the immune system and C-ImmSim with Filippo Castiglione10/08/2017
    1:06:32
  32. 40.
    #11 Collective cell migration with Linus Schumacher09/18/2017
    1:00:26
  33. 41.
    #10 Spatially variable genes and SpatialDE with Valentine Svensson09/03/2017
    57:33
  34. 42.
    #9 Michael Tessler and Christopher Mason on 16S amplicon vs shotgun sequencing08/18/2017
    45:52
  35. 43.
    #8 Perfect k-mer hashing in Sailfish08/05/2017
    22:08
  36. 44.
    #7 Metagenomics and Kraken07/09/2017
    28:22
  37. 45.
    #6 Allele-specific expression06/25/2017
    33:29
  38. 46.
    #5 Relative data analysis and propr with Thom Quinn06/10/2017
    55:36
  39. 47.
    #4 ChIP-seq and GenoGAM with Georg Stricker and Julien Gagneur05/29/2017
    55:10
  40. 48.
    #3 miRNA target site prediction and seedVicious with Antonio Marco05/12/2017
    56:33
  41. 49.
    #2 Single-cell RNA sequencing with Aleksandra Kolodziejczyk04/29/2017
    1:08:33
  42. 50.
    #1 Transcriptome assembly and Scallop with Mingfu Shao04/16/2017
    43:33

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